The complete mitochondrial genome sequence of Pterophyllum scalare (Cichliformes: Cichlidae).
Identifieur interne : 000001 ( Main/Exploration ); précédent : 000000; suivant : 000002The complete mitochondrial genome sequence of Pterophyllum scalare (Cichliformes: Cichlidae).
Auteurs : Guang-Peng Wang [République populaire de Chine] ; Qiao Min [République populaire de Chine] ; Gui-Cai SiSource :
- Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis [ 2470-1408 ] ; 2016.
Abstract
Pterophyllum scalare belongs in the family Cichlidae of Cichliformes. This species and its congeners are characterized by a compressed and disc-shaped body with dorsal and anal spiny rays increasing in length from anterior to posterior part of the fin. In this study, we determine and describe the complete mitogenome sequence of Pterophyllum scalare for the first time, which is 16,494 bp in length, and contains 37 genes, including 13 protein-coding genes, 2 rRNAs, 22 tRNAs, 1 origin of replication on the light-strand (OL) and a putative control region. The overall base composition is 27.5% A, 26.8% T, 30.1% C and 15.6% G, with a slight AT bias (54.3%). All protein-coding genes share the start codon ATG, except for COI that begins with GTG. These results are expected to provide useful molecular data for phylogenetic studies of Cichlidae and Cichliformes. Maximum Likelihood (ML) tree and Bayesian analyses based on partitioned nucleotide sequences of 12 mitochondrial protein-coding genes were constructed and both yielded trees with identical topologies.
DOI: 10.3109/19401736.2015.1036251
PubMed: 26017040
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 000018
- to stream PubMed, to step Curation: 000007
- to stream PubMed, to step Checkpoint: 000007
- to stream Ncbi, to step Merge: 000242
- to stream Ncbi, to step Curation: 000242
- to stream Ncbi, to step Checkpoint: 000242
- to stream Main, to step Merge: 000001
- to stream Main, to step Curation: 000001
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The complete mitochondrial genome sequence of Pterophyllum scalare (Cichliformes: Cichlidae).</title>
<author><name sortKey="Wang, Guang Peng" sort="Wang, Guang Peng" uniqKey="Wang G" first="Guang-Peng" last="Wang">Guang-Peng Wang</name>
<affiliation wicri:level="1"><nlm:affiliation>a Key Laboratory of Alpine Ecology and Biodiversity , Institute of Tibetan Plateau Research, Chinese Academy of Sciences , Beijing , China .</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>a Key Laboratory of Alpine Ecology and Biodiversity , Institute of Tibetan Plateau Research, Chinese Academy of Sciences , Beijing </wicri:regionArea>
<wicri:noRegion>Beijing </wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Min, Qiao" sort="Min, Qiao" uniqKey="Min Q" first="Qiao" last="Min">Qiao Min</name>
<affiliation wicri:level="1"><nlm:affiliation>b State Key Laboratory of Urban and Regional Ecology , Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences , Beijing , China .</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>b State Key Laboratory of Urban and Regional Ecology , Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences , Beijing </wicri:regionArea>
<wicri:noRegion>Beijing </wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Si, Gui Cai" sort="Si, Gui Cai" uniqKey="Si G" first="Gui-Cai" last="Si">Gui-Cai Si</name>
<affiliation><nlm:affiliation>c Key Laboratory of Petroleum Resources , Chinese Academy of Sciences , Lanzhou , China , and.</nlm:affiliation>
<wicri:noCountry code="subField">and</wicri:noCountry>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2016">2016</date>
<idno type="RBID">pubmed:26017040</idno>
<idno type="pmid">26017040</idno>
<idno type="doi">10.3109/19401736.2015.1036251</idno>
<idno type="wicri:Area/PubMed/Corpus">000018</idno>
<idno type="wicri:Area/PubMed/Curation">000007</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000007</idno>
<idno type="wicri:Area/Ncbi/Merge">000242</idno>
<idno type="wicri:Area/Ncbi/Curation">000242</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000242</idno>
<idno type="wicri:Area/Main/Merge">000001</idno>
<idno type="wicri:Area/Main/Curation">000001</idno>
<idno type="wicri:Area/Main/Exploration">000001</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">The complete mitochondrial genome sequence of Pterophyllum scalare (Cichliformes: Cichlidae).</title>
<author><name sortKey="Wang, Guang Peng" sort="Wang, Guang Peng" uniqKey="Wang G" first="Guang-Peng" last="Wang">Guang-Peng Wang</name>
<affiliation wicri:level="1"><nlm:affiliation>a Key Laboratory of Alpine Ecology and Biodiversity , Institute of Tibetan Plateau Research, Chinese Academy of Sciences , Beijing , China .</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>a Key Laboratory of Alpine Ecology and Biodiversity , Institute of Tibetan Plateau Research, Chinese Academy of Sciences , Beijing </wicri:regionArea>
<wicri:noRegion>Beijing </wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Min, Qiao" sort="Min, Qiao" uniqKey="Min Q" first="Qiao" last="Min">Qiao Min</name>
<affiliation wicri:level="1"><nlm:affiliation>b State Key Laboratory of Urban and Regional Ecology , Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences , Beijing , China .</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>b State Key Laboratory of Urban and Regional Ecology , Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences , Beijing </wicri:regionArea>
<wicri:noRegion>Beijing </wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Si, Gui Cai" sort="Si, Gui Cai" uniqKey="Si G" first="Gui-Cai" last="Si">Gui-Cai Si</name>
<affiliation><nlm:affiliation>c Key Laboratory of Petroleum Resources , Chinese Academy of Sciences , Lanzhou , China , and.</nlm:affiliation>
<wicri:noCountry code="subField">and</wicri:noCountry>
</affiliation>
</author>
</analytic>
<series><title level="j">Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis</title>
<idno type="eISSN">2470-1408</idno>
<imprint><date when="2016" type="published">2016</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Pterophyllum scalare belongs in the family Cichlidae of Cichliformes. This species and its congeners are characterized by a compressed and disc-shaped body with dorsal and anal spiny rays increasing in length from anterior to posterior part of the fin. In this study, we determine and describe the complete mitogenome sequence of Pterophyllum scalare for the first time, which is 16,494 bp in length, and contains 37 genes, including 13 protein-coding genes, 2 rRNAs, 22 tRNAs, 1 origin of replication on the light-strand (OL) and a putative control region. The overall base composition is 27.5% A, 26.8% T, 30.1% C and 15.6% G, with a slight AT bias (54.3%). All protein-coding genes share the start codon ATG, except for COI that begins with GTG. These results are expected to provide useful molecular data for phylogenetic studies of Cichlidae and Cichliformes. Maximum Likelihood (ML) tree and Bayesian analyses based on partitioned nucleotide sequences of 12 mitochondrial protein-coding genes were constructed and both yielded trees with identical topologies.</div>
</front>
</TEI>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
</list>
<tree><noCountry><name sortKey="Si, Gui Cai" sort="Si, Gui Cai" uniqKey="Si G" first="Gui-Cai" last="Si">Gui-Cai Si</name>
</noCountry>
<country name="République populaire de Chine"><noRegion><name sortKey="Wang, Guang Peng" sort="Wang, Guang Peng" uniqKey="Wang G" first="Guang-Peng" last="Wang">Guang-Peng Wang</name>
</noRegion>
<name sortKey="Min, Qiao" sort="Min, Qiao" uniqKey="Min Q" first="Qiao" last="Min">Qiao Min</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Eau/explor/ScalaireV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000001 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000001 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Eau |area= ScalaireV1 |flux= Main |étape= Exploration |type= RBID |clé= pubmed:26017040 |texte= The complete mitochondrial genome sequence of Pterophyllum scalare (Cichliformes: Cichlidae). }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:26017040" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a ScalaireV1
This area was generated with Dilib version V0.6.27. |